PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16727
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 325aa    MW: 35158.4 Da    PI: 7.6257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16727genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29166225159
               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +C+vkkkv+rsaed +vve tYegeHnh+
  EMT16727 166 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCRVKKKVQRSAEDSSVVEATYEGEHNHP 225
               58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.188161227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-28162227IPR003657WRKY domain
SuperFamilySSF1182904.05E-25162227IPR003657WRKY domain
SMARTSM007741.2E-33166226IPR003657WRKY domain
PfamPF031062.9E-24167225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDTAPVCLDL MVGRPMDHEP SRARCTGTRT EADVASSACG RAPSMTNDEA KILEAKLAQV  60
SEENRKLTEM IAYLYGNQVS RQSPDGEGQP RASTAASPTP PASKKRSRDS MDTSHSCDVE  120
ISNRNVGTGE AEHVDVDSPL SNGTCRRIKV KKVCTRIDPS DTSLVVKDGY QWRKYGQKVT  180
RDNPSPRAYF RCAFAPSCRV KKKVQRSAED SSVVEATYEG EHNHPHPTRA GELPSCATQG  240
GGSVPCSISI NSSGPTITLD LTKNGGGVQV VDAGEAQPDM KKVCREVASP EFQRALVEQM  300
ARELTGDQKF TDALAAAILR KLPDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-181652271677Probable WRKY transcription factor 4
2lex_A4e-181652271677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4243110.0JX424311.1 Triticum monococcum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578125.11e-164PREDICTED: probable WRKY transcription factor 40
TrEMBLN1QZ980.0N1QZ98_AEGTA; Putative WRKY transcription factor 40
STRINGMLOC_4945.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-51WRKY DNA-binding protein 40